U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Dpy19l4 dpy-19 like 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 297824, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Dpy19l4provided by RGD
    Official Full Name
    dpy-19 like 4provided by RGD
    Primary source
    RGD:1305828
    See related
    EnsemblRapid:ENSRNOG00000025416 AllianceGenome:RGD:1305828
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305828
    Summary
    Predicted to enable mannosyltransferase activity. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DPY19L4 (dpy-19 like 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 114.6), Kidney (RPKM 89.7) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Dpy19l4 in Genome Data Viewer
    Location:
    5q13
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (29148518..29208132, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (24351289..24410932, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (24503074..24560077, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene tumor protein p53 inducible nuclear protein 1 Neighboring gene cyclin E2 Neighboring gene integrator complex subunit 8 Neighboring gene epithelial splicing regulatory protein 1 Neighboring gene ribosomal protein S23, pseudogene 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables mannosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable C-mannosyltransferase DPY19L4
    Names
    protein dpy-19 homolog 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305280.1 → NP_001292209.1  probable C-mannosyltransferase DPY19L4

      See identical proteins and their annotated locations for NP_001292209.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6JFT1, D3Z939
      Related
      ENSRNOP00000034948.6, ENSRNOT00000037869.9
      Conserved Domains (1) summary
      pfam10034
      Location:60 → 713
      Dpy19; Q-cell neuroblast polarization

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      29148518..29208132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039109411.2 → XP_038965339.1  probable C-mannosyltransferase DPY19L4 isoform X1

      UniProtKB/TrEMBL
      A6JFT2
      Conserved Domains (1) summary
      pfam10034
      Location:1 → 652
      Dpy19; Q-cell neuroblast polarisation

    2. XM_063287283.1 → XP_063143353.1  probable C-mannosyltransferase DPY19L4 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools