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    Bovatus_RS08315 SusC/RagA family TonB-linked outer membrane protein [ Bacteroides ovatus ]

    Gene ID: 29451441, updated on 9-Jan-2025

    Summary

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    Gene symbol
    Bovatus_RS08315
    Gene description
    SusC/RagA family TonB-linked outer membrane protein
    Locus tag
    Bovatus_RS08315
    Gene type
    protein coding
    Organism
    Bacteroides ovatus (strain: ATCC 8483, nat-host: Homo sapiens, culture-collection: ATCC:8483, type-material: type strain of Bacteroides ovatus)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
    Old locus tag
    Bovatus_01703
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    Genomic context

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    NZ_CP012938.1Genomic Context describing neighboring genes Neighboring gene sulfatase Neighboring gene RagB/SusD family nutrient uptake outer membrane protein Neighboring gene pseudo Neighboring gene hypothetical protein Neighboring gene response regulator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP012938.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of RagA and RagB in Porphyromonas gingivalis: study using gene-deletion mutants. Nagano K, et al. J Med Microbiol, 2007 Nov. PMID 17965357
    2. The plug domain of a neisserial TonB-dependent transporter retains structural integrity in the absence of its transmembrane beta-barrel. Oke M, et al. FEBS Lett, 2004 Apr 30. PMID 15111112
    3. Structural basis for nutrient acquisition by dominant members of the human gut microbiota. Glenwright AJ, et al. Nature, 2017 Jan 19. PMID 28077872, Free PMC Article
    4. Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron. Cho KH, et al. J Bacteriol, 2001 Dec. PMID 11717282, Free PMC Article
    5. Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides. Wu M, et al. Science, 2015 Oct 2. PMID 26430127, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    SusC/RagA family TonB-linked outer membrane protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP012938.1 Reference assembly

      Range
      2049396..2052602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_004300814.1 MULTISPECIES: SusC/RagA family TonB-linked outer membrane protein [Bacteroides]

      See identical proteins and their annotated locations for WP_004300814.1

      UniProtKB/TrEMBL
      A0A1Y4PID5, A0A3A5SLD1, A0AAN3D692
      Conserved Domains (1) summary
      TIGR04056
      Location:27 → 1067
      OMP_RagA_SusC; TonB-linked outer membrane protein, SusC/RagA family
    Nucleotide Protein
    Heading Accession and Version