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    ODC1 ornithine decarboxylase 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 281365, updated on 30-Jan-2025

    Summary

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    Gene symbol
    ODC1
    Gene description
    ornithine decarboxylase 1
    See related
    BGD:BT11197; EnsemblRapid:ENSBTAG00070006056
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Annotation information
    Note: GeneIDs 281365 and 790350 are both annotated independently on Btau_4.6.1 as neighboring genes, but may represent redundant loci. [17 Jun 2014]
    Orthologs
    human mouse all
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    Genomic context

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    See ODC1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (87197614..87204764)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene craniofacial development protein 2-like Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene hippocalcin like 1 Neighboring gene craniofacial development protein 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Bovine ornithine decarboxylase gene: cloning, structure and polymorphisms. Yao J, et al. DNA Seq, 1998 Mar. PMID 10520448
    2. Molecular cloning of a bovine ornithine decarboxylase cDNA and its use in the detection of restriction fragment length polymorphisms in Holsteins. Yao J, et al. Genome, 1995 Apr. PMID 7774801
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ornithine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in putrescine biosynthetic process from ornithine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ornithine decarboxylase
    NP_776555.1
    XP_005212975.1
    XP_005212976.1
    XP_024854032.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174130.2 → NP_776555.1  ornithine decarboxylase

      See identical proteins and their annotated locations for NP_776555.1

      Status: PROVISIONAL

      Source sequence(s)
      M92441
      UniProtKB/Swiss-Prot
      A6H7E8, P27117
      Conserved Domains (1) summary
      cd00622
      Location:37 → 408
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      87197614..87204764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024998264.2 → XP_024854032.1  ornithine decarboxylase isoform X1

      UniProtKB/Swiss-Prot
      A6H7E8, P27117
      Related
      ENSBTAP00070008098.1, ENSBTAT00070013877.1
      Conserved Domains (1) summary
      cd00622
      Location:37 → 408
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase

    2. XM_005212918.4 → XP_005212975.1  ornithine decarboxylase isoform X1

      See identical proteins and their annotated locations for XP_005212975.1

      UniProtKB/Swiss-Prot
      A6H7E8, P27117
      Conserved Domains (1) summary
      cd00622
      Location:37 → 408
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase

    3. XM_005212919.5 → XP_005212976.1  ornithine decarboxylase isoform X1

      See identical proteins and their annotated locations for XP_005212976.1

      UniProtKB/Swiss-Prot
      A6H7E8, P27117
      Conserved Domains (1) summary
      cd00622
      Location:37 → 408
      PLPDE_III_ODC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P27117.1 GenPept UniProtKB/Swiss-Prot:P27117

    Gene LinkOut

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