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    CMQ_97 farnesyl-pyrophosphate synthetase [ Grosmannia clavigera kw1407 ]

    Gene ID: 25982107, updated on 30-Dec-2023

    Summary

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    Gene symbol
    CMQ_97
    Gene description
    farnesyl-pyrophosphate synthetase
    Locus tag
    CMQ_97
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Grosmannia clavigera kw1407 (strain: kw1407, culture-collection: UAMH:11150)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Leptographium
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    Genomic context

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    See CMQ_97 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    3

    NW_014040759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene FAD dependent oxidoreductase Neighboring gene protease s8 tripeptidyl peptidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_014040759.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen. DiGuistini S, et al. Proc Natl Acad Sci U S A, 2011 Feb 8. PMID 21262841, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aldehyde-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables dimethylallyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables geranyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in farnesyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    farnesyl-pyrophosphate synthetase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_014040759.1 Reference assembly

      Range
      1072080..1073599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014314036.1 → XP_014169511.1  farnesyl-pyrophosphate synthetase [Grosmannia clavigera kw1407]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F0XQW5
      Conserved Domains (2) summary
      pfam00348
      Location:46 → 301
      polyprenyl_synt; Polyprenyl synthetase
      pfam09363
      Location:344 → 380
      XFP_C; XFP C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases