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    T265_08601 hypothetical protein [ Opisthorchis viverrini ]

    Gene ID: 20322780, updated on 28-Dec-2023

    Summary

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    Gene symbol
    T265_08601
    Gene description
    hypothetical protein
    Locus tag
    T265_08601
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Opisthorchis viverrini
    Lineage
    Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea; Opisthorchiida; Opisthorchiata; Opisthorchiidae; Opisthorchis
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    20

    NW_008751884.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008751884.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Opisthorchis viverrini genome provides insights into life in the bile duct. Young ND, et al. Nat Commun, 2014 Jul 9. PMID 25007141, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008751884.1 Reference assembly

      Range
      120356..153078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009174456.1 → XP_009172720.1  hypothetical protein T265_08601 [Opisthorchis viverrini]

      See identical proteins and their annotated locations for XP_009172720.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A074Z8H4
      Conserved Domains (6) summary
      cd12446
      Location:142 → 224
      RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
      pfam12146
      Location:1468 → 1656
      Hydrolase_4; Serine aminopeptidase, S33
      pfam12695
      Location:1468 → 1644
      Abhydrolase_5; Alpha/beta hydrolase family
      pfam13863
      Location:450 → 542
      DUF4200; Domain of unknown function (DUF4200)
      cl00490
      Location:512 → 654
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
      cl02562
      Location:1254 → 1302
      PWI; PWI domain
    Nucleotide Protein
    Heading Accession and Version

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