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    LOTGIDRAFT_231995 hypothetical protein [ Lottia gigantea (owl limpet) ]

    Gene ID: 20248781, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOTGIDRAFT_231995
    Gene description
    hypothetical protein
    Locus tag
    LOTGIDRAFT_231995
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Lottia gigantea
    Lineage
    Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Lottioidea; Lottiidae; Lottia
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    Genomic context

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    See LOTGIDRAFT_231995 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    35

    NW_008708707.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008708707.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into bilaterian evolution from three spiralian genomes. Simakov O, et al. Nature, 2013 Jan 24. PMID 23254933, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008708707.1 Reference assembly

      Range
      3664044..3686263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009055427.1 → XP_009053675.1  hypothetical protein LOTGIDRAFT_231995 [Lottia gigantea]

      See identical proteins and their annotated locations for XP_009053675.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      V4AQB1
      Conserved Domains (10) summary
      smart00303
      Location:2226 → 2280
      GPS; G-protein-coupled receptor proteolytic site domain
      cd11304
      Location:652 → 747
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00180
      Location:1857 → 1902
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      COG0477
      Location:2269 → 2526
      ProP; MFS family permease [Carbohydrate transport and metabolism, Amino acid transport and metabolism, Inorganic ion transport and metabolism, General function prediction only]
      cd00054
      Location:1235 → 1270
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00110
      Location:1336 → 1498
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam02210
      Location:1591 → 1706
      Laminin_G_2; Laminin G domain
      pfam02793
      Location:1906 → 1969
      HRM; Hormone receptor domain
      pfam16489
      Location:1995 → 2198
      GAIN; GPCR-Autoproteolysis INducing (GAIN) domain
      cl21561
      Location:2290 → 2522
      7tm_4; Olfactory receptor
    Nucleotide Protein
    Heading Accession and Version

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