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    grl-13 Ground-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 185200, updated on 9-Dec-2024

    Summary

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    Official Symbol
    grl-13
    Official Full Name
    Ground-like domain-containing protein
    Primary source
    WormBase:WBGene00001722
    Locus tag
    CELE_F32D1.4
    See related
    AllianceGenome:WB:WBGene00001722
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in arcade cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See grl-13 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (4362668..4364617, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DNA replication licensing factor MCM7 Neighboring gene TPR_REGION domain-containing protein;dolichyl-phosphate-mannose--protein mannosyltransferase Neighboring gene ncRNA Neighboring gene Activin_recp domain-containing protein Neighboring gene GMP reductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Caenorhabditis elegans has scores of hedgehog-related genes: sequence and expression analysis. Aspöck G, et al. Genome Res, 1999 Oct. PMID 10523520
    2. Comprehensive analysis of gene expression patterns of hedgehog-related genes. Hao L, et al. BMC Genomics, 2006 Oct 31. PMID 17076889, Free PMC Article
    3. Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif. Bürglin TR. BMC Genomics, 2008 Mar 11. PMID 18334026, Free PMC Article
    4. Meta-Analysis of Caenorhabditis elegans Transcriptomics Implicates Hedgehog-Like Signaling in Host-Microbe Interactions. Zárate-Potes A, et al. Front Microbiol, 2022. PMID 35620104, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Ground-like domain-containing protein
    NP_001317808.1
    • Confirmed by transcript evidence
    NP_504201.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4362668..4364617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001330858.4 → NP_001317808.1  Ground-like domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A163VU65
      Conserved Domains (2) summary
      pfam04155
      Location:202 → 270
      Ground-like; Ground-like domain
      pfam09770
      Location:29 → 144
      PAT1; Topoisomerase II-associated protein PAT1

    2. NM_071800.4 → NP_504201.2  Ground-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504201.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16295
      Conserved Domains (2) summary
      pfam04155
      Location:203 → 271
      Ground-like; Ground-like domain
      pfam09770
      Location:29 → 144
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein
    Heading Accession and Version

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