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    LOC18448098 sulfiredoxin, chloroplastic/mitochondrial [ Amborella trichopoda ]

    Gene ID: 18448098, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18448098
    Gene description
    sulfiredoxin, chloroplastic/mitochondrial
    Locus tag
    AMTR_s00062p00193540
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18448098 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006500347.1 (3452990..3465972, complement)

    NW_006500347.1Genomic Context describing neighboring genes Neighboring gene phosphoglycerate kinase, cytosolic Neighboring gene protein NAP1 Neighboring gene probable gamma-aminobutyrate transaminase 3, mitochondrial Neighboring gene ATP-dependent zinc metalloprotease FTSH 12, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006500347.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sulfiredoxin activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sulfiredoxin, chloroplastic/mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006500347.1 Reference AMTR1.0 Primary Assembly

      Range
      3452990..3465972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020675850.1 → XP_020531509.1  sulfiredoxin, chloroplastic/mitochondrial isoform X3

      Conserved Domains (1) summary
      cl28891
      Location:42 → 81
      ParB_N_Srx; ParB N-terminal domain and sulfiredoxin protein-related families

    2. XM_011630174.1 → XP_011628476.1  sulfiredoxin, chloroplastic/mitochondrial isoform X2

      Conserved Domains (2) summary
      smart00470
      Location:44 → 123
      ParB; ParB-like nuclease domain
      COG1475
      Location:42 → 123
      Spo0J; Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, cell division, chromosome partitioning]

    3. XM_020675848.1 → XP_020531507.1  sulfiredoxin, chloroplastic/mitochondrial isoform X1

      Conserved Domains (1) summary
      cl28891
      Location:42 → 80
      ParB_N_Srx; ParB N-terminal domain and sulfiredoxin protein-related families
    Nucleotide Protein
    Heading Accession and Version

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