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    LOC18443476 inositol-tetrakisphosphate 1-kinase 3 [ Amborella trichopoda ]

    Gene ID: 18443476, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC18443476
    Gene description
    inositol-tetrakisphosphate 1-kinase 3
    Locus tag
    AMTR_s00056p00164210
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18443476 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499905.1 (2569750..2586201, complement)

    NW_006499905.1Genomic Context describing neighboring genes Neighboring gene probable glutamate carboxypeptidase LAMP1 Neighboring gene uncharacterized LOC18443475 Neighboring gene inactive poly [ADP-ribose] polymerase RCD1 Neighboring gene probable pectinesterase 53

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006499905.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inositol-1,3,4-trisphosphate 5-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inositol-1,3,4-trisphosphate 6-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inositol-3,4,5,6-tetrakisphosphate 1-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in inositol trisphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inositol-tetrakisphosphate 1-kinase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006499905.1 Reference AMTR1.0 Primary Assembly

      Range
      2569750..2586201 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006853665.3 → XP_006853727.3  inositol-tetrakisphosphate 1-kinase 3 isoform X1

      UniProtKB/TrEMBL
      U5CYF6
      Conserved Domains (1) summary
      PLN02941
      Location:79 → 388
      PLN02941; inositol-tetrakisphosphate 1-kinase

    2. XM_020673131.1 → XP_020528790.1  inositol-tetrakisphosphate 1-kinase 3 isoform X3

      Conserved Domains (1) summary
      cl17255
      Location:25 → 262
      CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

    3. XM_020673130.1 → XP_020528789.1  inositol-tetrakisphosphate 1-kinase 3 isoform X2

      UniProtKB/TrEMBL
      U5CYF6
      Conserved Domains (1) summary
      PLN02941
      Location:79 → 366
      PLN02941; inositol-tetrakisphosphate 1-kinase
    Nucleotide Protein
    Heading Accession and Version

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