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    LOC18432491 uncharacterized LOC18432491 [ Amborella trichopoda ]

    Gene ID: 18432491, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18432491
    Gene description
    uncharacterized LOC18432491
    Locus tag
    AMTR_s00077p00195260
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18432491 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006498122.1 (3512467..3517568, complement)

    NW_006498122.1Genomic Context describing neighboring genes Neighboring gene probable galacturonosyltransferase 7 Neighboring gene protein MOR1 Neighboring gene splicing factor 3B subunit 2-like Neighboring gene hemK methyltransferase family member 2 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006498122.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in tRNA threonylcarbamoyladenosine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of EKC/KEOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC18432491

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006498122.1 Reference AMTR1.0 Primary Assembly

      Range
      3512467..3517568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020666178.1 → XP_020521837.1  uncharacterized protein LOC18432491 isoform X4

      Conserved Domains (1) summary
      pfam09341
      Location:20 → 92
      Pcc1; Transcription factor Pcc1

    2. XM_020666174.1 → XP_020521833.1  uncharacterized protein LOC18432491 isoform X1

      Conserved Domains (1) summary
      pfam09341
      Location:29 → 101
      Pcc1; Transcription factor Pcc1

    3. XM_020666175.1 → XP_020521834.1  uncharacterized protein LOC18432491 isoform X3

      UniProtKB/TrEMBL
      W1P9P7
      Conserved Domains (1) summary
      pfam09341
      Location:27 → 99
      Pcc1; Transcription factor Pcc1

    4. XM_011624413.2 → XP_011622715.1  uncharacterized protein LOC18432491 isoform X3

      See identical proteins and their annotated locations for XP_011622715.1

      UniProtKB/TrEMBL
      W1P9P7
      Conserved Domains (1) summary
      pfam09341
      Location:27 → 99
      Pcc1; Transcription factor Pcc1

    5. XM_020666177.1 → XP_020521836.1  uncharacterized protein LOC18432491 isoform X3

      UniProtKB/TrEMBL
      W1P9P7
      Conserved Domains (1) summary
      pfam09341
      Location:27 → 99
      Pcc1; Transcription factor Pcc1

    6. XM_020666176.1 → XP_020521835.1  uncharacterized protein LOC18432491 isoform X3

      UniProtKB/TrEMBL
      W1P9P7
      Conserved Domains (1) summary
      pfam09341
      Location:27 → 99
      Pcc1; Transcription factor Pcc1

    7. XM_011624412.2 → XP_011622714.1  uncharacterized protein LOC18432491 isoform X2

      Conserved Domains (1) summary
      pfam09341
      Location:28 → 100
      Pcc1; Transcription factor Pcc1
    Nucleotide Protein
    Heading Accession and Version

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