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    CHC_T00010136001 VAMP7a [ Chondrus crispus (carragheen) ]

    Gene ID: 17319502, updated on 16-Nov-2023

    Summary

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    Gene symbol
    CHC_T00010136001
    Gene description
    VAMP7a
    Locus tag
    CHC_T00010136001
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Chondrus crispus (strain: Stackhouse)
    Lineage
    Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales; Gigartinaceae; Chondrus
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    Genomic context

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    Exon count:
    4

    NW_005178809.1Genomic Context describing neighboring genes Neighboring gene Syntaxin Neighboring gene hypothetical protein Neighboring gene Translation initiation factor eIF2B, subunit beta Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005178809.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Collén J, et al. Proc Natl Acad Sci U S A, 2013 Mar 26. PMID 23503846, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    3'UTR

    • Loc: c278606-278305

    5'UTR

    • Loc: c279586-279395

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    VAMP7a

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_005178809.1 Reference assembly

      Range
      278305..279586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005711743.1 → XP_005711800.1  VAMP7a [Chondrus crispus]

      See identical proteins and their annotated locations for XP_005711800.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      R7Q3S3
      Conserved Domains (3) summary
      cd15843
      Location:138 → 197
      R-SNARE; SNARE motif, subgroup R-SNARE
      pfam00957
      Location:136 → 203
      Synaptobrevin; Synaptobrevin
      pfam13774
      Location:54 → 111
      Longin; Regulated-SNARE-like domain
    Nucleotide Protein
    Heading Accession and Version

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