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    W02D9.2 Protein YIPF [ Caenorhabditis elegans ]

    Gene ID: 173123, updated on 9-Dec-2024

    Summary

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    Official Symbol
    W02D9.2
    Official Full Name
    Protein YIPF
    Primary source
    WormBase:WBGene00012208
    Locus tag
    CELE_W02D9.2
    See related
    AllianceGenome:WB:WBGene00012208
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network. Orthologous to human YIPF6 (Yip1 domain family member 6). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See W02D9.2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    7
    Sequence:
    Chromosome: I; NC_003279.8 (12532742..12534404)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene ncRNA Neighboring gene DNA primase large subunit Neighboring gene HMG box domain-containing protein Neighboring gene Zf-3CxxC domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Protein YIPF
    NP_001251924.1
    • Confirmed by transcript evidence
    NP_001251925.1
    • Partially confirmed by transcript evidence
    NP_001251926.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      12532742..12534404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001264995.5 → NP_001251924.1  Protein YIPF [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001251924.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O02335
      Conserved Domains (1) summary
      cl21557
      Location:56 → 229
      Yip1; Yip1 domain

    2. NM_001264996.4 → NP_001251925.1  Protein YIPF [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001251925.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C6KRN3
      Conserved Domains (1) summary
      cl21557
      Location:64 → 237
      Yip1; Yip1 domain

    3. NM_001264997.3 → NP_001251926.1  Protein YIPF [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001251926.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D7SFP5
      Conserved Domains (1) summary
      cl21557
      Location:39 → 212
      Yip1; Yip1 domain
    Nucleotide Protein
    Heading Accession and Version

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