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    TCEAL6 transcription elongation factor A like 6 [ Homo sapiens (human) ]

    Gene ID: 158931, updated on 27-Nov-2024

    Summary

    Official Symbol
    TCEAL6provided by HGNC
    Official Full Name
    transcription elongation factor A like 6provided by HGNC
    Primary source
    HGNC:HGNC:24553
    See related
    AllianceGenome:HGNC:24553
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    WEX2; Tceal3
    Summary
    Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Annotation information
    Annotation category: suggests misassembly
    Expression
    Biased expression in brain (RPKM 18.6), testis (RPKM 12.2) and 4 other tissues See more
    Orthologs
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    Genomic context

    See TCEAL6 in Genome Data Viewer
    Location:
    Xq22.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (102138502..102142481, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (100583085..100587065, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (101393474..101397453, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene MT-ND6 pseudogene 13 Neighboring gene transcription elongation factor A like 2 Neighboring gene uncharacterized LOC105373299 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29813 Neighboring gene brain expressed X-linked 5 Neighboring gene t-complex 11 family, X-linked 3, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    transcription elongation factor A protein-like 6
    Names
    TCEA-like protein 6
    transcription elongation factor A (SII)-like 3
    transcription elongation factor A (SII)-like 6
    transcription elongation factor S-II protein-like 6

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006938.3NP_001006939.2  transcription elongation factor A protein-like 6 isoform 2

      See identical proteins and their annotated locations for NP_001006939.2

      Status: VALIDATED

      Source sequence(s)
      Z70719
      Conserved Domains (2) summary
      pfam04538
      Location:72173
      BEX; Brain expressed X-linked like family
      pfam15724
      Location:2794
      TMEM119; TMEM119 family
    2. NM_001367790.1NP_001354719.1  transcription elongation factor A protein-like 6 isoform 1

      Status: VALIDATED

      Source sequence(s)
      Z70719
      UniProtKB/Swiss-Prot
      Q5H9J8, Q6IPX3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      102138502..102142481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791816.1 Reference GRCh38.p14 PATCHES

      Range
      33591..37571 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      100583085..100587065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)