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    ppiH U4/U6 small nuclear ribonucleoprotein [ Cavenderia fasciculata ]

    Gene ID: 14870726, updated on 28-Dec-2023

    Summary

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    Gene symbol
    ppiH
    Gene description
    U4/U6 small nuclear ribonucleoprotein
    Locus tag
    DFA_04227
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cavenderia fasciculata (isolate: SH3)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Acytosteliales; Cavenderiaceae; Cavenderia
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    Genomic context

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    See ppiH in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_004457708.1Genomic Context describing neighboring genes Neighboring gene thioredoxin reductase Neighboring gene enhancer of rudimentary family protein Neighboring gene putative RNA helicase Neighboring gene putative ATP citrate synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004457708.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U4/U6 small nuclear ribonucleoprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004457708.1 Reference assembly

      Range
      1319833..1320444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004366578.1 → XP_004366635.1  U4/U6 small nuclear ribonucleoprotein [Cavenderia fasciculata]

      See identical proteins and their annotated locations for XP_004366635.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F4Q1N0
      Conserved Domains (1) summary
      cd01926
      Location:16 → 181
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
    Nucleotide Protein
    Heading Accession and Version

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