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    METHO_RS03050 deoxyribodipyrimidine photo-lyase [ Methanomethylovorans hollandica DSM 15978 ]

    Gene ID: 14407759, updated on 22-Oct-2024

    Summary

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    Gene symbol
    METHO_RS03050
    Gene description
    deoxyribodipyrimidine photo-lyase
    Locus tag
    METHO_RS03050
    Gene type
    protein coding
    Organism
    Methanomethylovorans hollandica DSM 15978 (strain: DSM 15978, culture-collection: DSM:15978, type-material: type strain of Methanomethylovorans hollandica)
    Lineage
    Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans
    Old locus tag
    Metho_0627
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    Genomic context

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    Sequence:
    NC_019977.1 (635331..636689)

    NC_019977.1Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene heme-binding protein Neighboring gene MATE family efflux transporter Neighboring gene tRNA-Leu

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_019977.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DNA repair by photolyases. Kavakli IH, et al. Adv Protein Chem Struct Biol, 2019. PMID 30798929
    2. Evolution of Proteins of the DNA Photolyase/Cryptochrome Family. Vechtomova YL, et al. Biochemistry (Mosc), 2020 Jan. PMID 32087057
    3. The cryptochrome-photolyase protein family in diatoms. König S, et al. J Plant Physiol, 2017 Oct. PMID 28720252

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    deoxyribodipyrimidine photo-lyase
    WP_015324052.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_019977.1 Reference assembly

      Range
      635331..636689
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_015324052.1 deoxyribodipyrimidine photo-lyase [Methanomethylovorans hollandica]

      See identical proteins and their annotated locations for WP_015324052.1

      UniProtKB/TrEMBL
      L0KY33
      Conserved Domains (3) summary
      COG0415
      Location:5 → 452
      PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
      pfam00875
      Location:5 → 166
      DNA_photolyase; DNA photolyase
      pfam03441
      Location:199 → 446
      FAD_binding_7; FAD binding domain of DNA photolyase
    Nucleotide Protein
    Heading Accession and Version

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