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    tfec transcription factor EC [ Onychostoma macrolepis ]

    Gene ID: 131539644, updated on 12-Sep-2024

    Summary

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    Gene symbol
    tfec
    Gene description
    transcription factor EC
    Locus tag
    G5714_005034
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Onychostoma macrolepis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Acrossocheilinae; Onychostoma
    Orthologs
    zebrafish all
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    Genomic context

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    See tfec in Genome Data Viewer
    Location:
    chromosome: 04
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_08 current ASM1243209v1 (GCF_012432095.1) 04 NC_081158.1 (30024834..30073780)

    Chromosome 04 - NC_081158.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131539195 Neighboring gene uncharacterized LOC131538551 Neighboring gene uncharacterized LOC131539647 Neighboring gene uncharacterized LOC131539646 Neighboring gene MyoD family inhibitor domain containing

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_081158.1 Chromosome 04 Reference ASM1243209v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor EC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_012432095.1-RS_2023_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1243209v1 Primary Assembly

    Genomic

    1. NC_081158.1 Reference ASM1243209v1 Primary Assembly

      Range
      30024834..30073780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_058774307.1 → XP_058630290.1  transcription factor EC isoform X2

      UniProtKB/TrEMBL
      A0A7J6D6E3

    2. XM_058774306.1 → XP_058630289.1  transcription factor EC isoform X1

    3. XM_058774309.1 → XP_058630292.1  transcription factor EC isoform X4

    4. XM_058774312.1 → XP_058630295.1  transcription factor EC isoform X6

    5. XM_058774308.1 → XP_058630291.1  transcription factor EC isoform X3

    6. XM_058774310.1 → XP_058630293.1  transcription factor EC isoform X5

    Nucleotide Protein
    Heading Accession and Version

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