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    LOC131372335 STARR-seq mESC enhancer starr_16978 [ Mus musculus (house mouse) ]

    Gene ID: 131372335, updated on 10-Feb-2024

    Summary

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    Gene symbol
    LOC131372335
    Gene description
    STARR-seq mESC enhancer starr_16978
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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    Genomic context

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    See LOC131372335 in Genome Data Viewer
    Location:
    chromosome: 6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (108698010..108703300)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 0610040F04 gene Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr6:108580835-108581135 Neighboring gene STARR-positive B cell enhancer mm9_chr6:108611576-108611876 Neighboring gene basic helix-loop-helix family, member e40 Neighboring gene STARR-positive B cell enhancer ABC_E1705 Neighboring gene predicted gene, 35359 Neighboring gene STARR-positive B cell enhancer ABC_E8121 Neighboring gene STARR-positive B cell enhancer ABC_E6466 Neighboring gene predicted gene, 51409 Neighboring gene ADP-ribosylation factor-like 8B Neighboring gene predicted gene, 35417 Neighboring gene STARR-positive B cell enhancer mm9_chr6:108775076-108775377 Neighboring gene STARR-positive B cell enhancer ABC_E3668 Neighboring gene STARR-positive B cell enhancer ABC_E3669 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:108785919-108786120 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:108786185-108786368 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:108789575-108789776 Neighboring gene ER degradation enhancer, mannosidase alpha-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_212629.1 

      Range
      101..5391
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      108698010..108703300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version