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    LOC128926265 CapStarr-seq enhancer MGSCv37_chr9:112129224-112129377 [ Mus musculus (house mouse) ]

    Gene ID: 128926265, updated on 8-Feb-2024

    Summary

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    Gene symbol
    LOC128926265
    Gene description
    CapStarr-seq enhancer MGSCv37_chr9:112129224-112129377
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rr368878
    Summary
    This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in P5424 T cells and NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
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    Genomic context

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    See LOC128926265 in Genome Data Viewer
    Location:
    chromosome: 9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (112055788..112055941)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39430 Neighboring gene cyclic AMP-regulated phosphoprotein, 21 Neighboring gene microRNA 128-2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112110378-112110659 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112121946-112122147 Neighboring gene RIKEN cDNA 2310075C17 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:112127556-112127739 Neighboring gene RIKEN cDNA 2900079G21 gene Neighboring gene STARR-seq mESC enhancer starr_25304

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • regulatory region 368878

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_151919.1 

      Range
      101..254
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      112055788..112055941
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version