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    LOC127827441 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:38679260-38679962 [ Homo sapiens (human) ]

    Gene ID: 127827441, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC127827441
    Gene description
    H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:38679260-38679962
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Nov 2022]
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    Genomic context

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    See LOC127827441 in Genome Data Viewer
    Location:
    chromosome: 14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (38210055..38210757)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (32398754..32399456)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (38679260..38679962)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370456 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:38473631-38474167 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:38658931-38659920 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:38659921-38660910 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:38664869-38665857 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:38668032-38668532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:38668533-38669033 Neighboring gene Sharpr-MPRA regulatory region 1824 Neighboring gene uncharacterized LOC124903303 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:38676911-38677572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:38678556-38679259 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:38691195-38691719 Neighboring gene somatostatin receptor 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:38724480-38725107 Neighboring gene uncharacterized LOC112268136 Neighboring gene C-type lectin domain containing 14A Neighboring gene ReSE screen-validated silencer GRCh37_chr14:38824709-38824949 Neighboring gene uncharacterized LOC124903304

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_128945.1 

      Range
      101..803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      38210055..38210757
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      32398754..32399456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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