U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC127815060 NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88338413-88339088 [ Homo sapiens (human) ]

    Gene ID: 127815060, updated on 12-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC127815060
    Gene description
    NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88338413-88339088
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the NANOG transcription factor and is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Nov 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC127815060 in Genome Data Viewer
    Location:
    chromosome: 9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (85723498..85724173)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (97873993..97874668)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (88338413..88339088)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 33 pseudogene 1 Neighboring gene uncharacterized LOC101927603 Neighboring gene ATP/GTP binding carboxypeptidase 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88215278-88216090 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88337736-88338412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28513 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19987 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19988 Neighboring gene kinesin family member 27 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19989 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19990 Neighboring gene NANOG hESC enhancer GRCh37_chr9:88433900-88434401 Neighboring gene kinesin family member 27 pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_116578.1 

      Range
      101..776
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      85723498..85724173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      97873993..97874668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases