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    LOC124218685 contactin [ Neodiprion pinetum (white pine sawfly) ]

    Gene ID: 124218685, updated on 23-Oct-2024

    Summary

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    Gene symbol
    LOC124218685
    Gene description
    contactin
    See related
    EnsemblRapid:LOC124218685
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neodiprion pinetum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Diprionidae; Diprioninae; Neodiprion
    Orthologs
    honey bee all
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    Genomic context

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    See LOC124218685 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_10 current iyNeoPine1.2 (GCF_021155775.2) 5 NC_060236.1 (35622143..35628618, complement)
    100 previous assembly iyNeoPine1.1 (GCF_021155775.1) 5 NC_060236.1 (35622143..35628618, complement)

    Chromosome 5 - NC_060236.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein KIAA2013 homolog Neighboring gene GABA neurotransmitter transporter-1A Neighboring gene triadin Neighboring gene F-BAR domain only protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    contactin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_021155775.2-RS_2024_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference iyNeoPine1.2

    Genomic

    1. NC_060236.1 Reference iyNeoPine1.2

      Range
      35622143..35628618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046625354.1 → XP_046481310.1  contactin

      Related
      XP_046481310.1, XM_046625354.1
    Nucleotide Protein
    Heading Accession and Version

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