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    LOC123093941 VAN3-binding protein-like [ Triticum aestivum (bread wheat) ]

    Gene ID: 123093941, updated on 27-Nov-2024

    Summary

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    Gene symbol
    LOC123093941
    Gene description
    VAN3-binding protein-like
    See related
    EnsemblRapid:TraesCS4B03G0960200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Triticum aestivum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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    Genomic context

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    See LOC123093941 in Genome Data Viewer
    Location:
    chromosome: 4B
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 4B NC_057804.1 (657893306..657895350, complement)

    Chromosome 4B - NC_057804.1Genomic Context describing neighboring genes Neighboring gene coatomer subunit alpha-3-like Neighboring gene uncharacterized LOC123089694 Neighboring gene formyltetrahydrofolate deformylase 2, mitochondrial-like Neighboring gene BTB/POZ and MATH domain-containing protein 1-like Neighboring gene uncharacterized LOC123089696

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057804.1 Chromosome 4B Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A TRIM insertion in the promoter of Ms2 causes male sterility in wheat. Xia C, et al. Nat Commun, 2017 May 12. PMID 28497807, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in auxin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf vascular tissue pattern formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phloem or xylem histogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    VAN3-binding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Genomic

    1. NC_057804.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

      Range
      657893306..657895350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044516002.1 → XP_044371937.1  VAN3-binding protein-like

      UniProtKB/TrEMBL
      A0A3B6J060
      Related
      TraesCS4B03G0960200, TraesCS4B03G0960200.1
      Conserved Domains (2) summary
      pfam05703
      Location:37 → 267
      Auxin_canalis; Auxin canalisation
      pfam08458
      Location:282 → 383
      PH_2; Plant pleckstrin homology-like region
    Nucleotide Protein
    Heading Accession and Version

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