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    LOC122942136 peroxidasin homolog [ Bufo gargarizans (Asiatic toad) ]

    Gene ID: 122942136, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC122942136
    Gene description
    peroxidasin homolog
    See related
    EnsemblRapid:ENSBGGG00000014387
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bufo gargarizans
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
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    Genomic context

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    See LOC122942136 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current ASM1485885v1 (GCF_014858855.1) 6 NC_058085.1 (269948064..270016982)

    Chromosome 6 - NC_058085.1Genomic Context describing neighboring genes Neighboring gene myelin transcription factor 1 Neighboring gene protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 Neighboring gene potassium voltage-gated channel subfamily Q member 2 Neighboring gene neuronal acetylcholine receptor subunit alpha-4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058085.1 Chromosome 6 Reference ASM1485885v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxidasin homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bufo gargarizans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1485885v1 Primary Assembly

    Genomic

    1. NC_058085.1 Reference ASM1485885v1 Primary Assembly

      Range
      269948064..270016982
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044299632.1 → XP_044155567.1  peroxidasin homolog

      Related
      ENSBGGP00000018968.1, ENSBGGT00000021128.1
      Conserved Domains (8) summary
      TIGR00864
      Location:152 → 263
      PCC; polycystin cation channel protein
      cd09826
      Location:758 → 1198
      peroxidasin_like; Animal heme peroxidase domain of peroxidasin and related proteins
      smart00408
      Location:247 → 311
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:335 → 416
      IG_like; Immunoglobulin like
      COG4886
      Location:52 → 187
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:32 → 50
      LRR_RI; leucine-rich repeat [structural motif]
      cd00096
      Location:437 → 441
      Ig; Ig strand B [structural motif]
      cl11960
      Location:433 → 506
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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