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    mpp4b MAGUK p55 scaffold protein 4b [ Siniperca chuatsi (mandarin fish) ]

    Gene ID: 122872453, updated on 12-Sep-2024

    Summary

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    Gene symbol
    mpp4b
    Gene description
    MAGUK p55 scaffold protein 4b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Siniperca chuatsi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
    Orthologs
    human zebrafish all
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    Genomic context

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    See mpp4b in Genome Data Viewer
    Location:
    chromosome: LG24
    Exon count:
    24
    Annotation release Status Assembly LG Location
    100 current ASM2008510v1 (GCF_020085105.1) LG24 NC_058065.1 (4710465..4727057, complement)

    Linkage Group LG24 - NC_058065.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 20A1 Neighboring gene transmembrane protein 237B-like Neighboring gene alsin Rho guanine nucleotide exchange factor ALS2 b Neighboring gene neuronal acetylcholine receptor subunit alpha-2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058065.1 Chromosome LG24 Reference ASM2008510v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MAGUK p55 subfamily member 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2008510v1 Primary Assembly

    Genomic

    1. NC_058065.1 Reference ASM2008510v1 Primary Assembly

      Range
      4710465..4727057 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044188722.1 → XP_044044657.1  MAGUK p55 subfamily member 4

      Conserved Domains (4) summary
      smart00569
      Location:83 → 129
      L27; domain in receptor targeting proteins Lin-2 and Lin-7
      smart00072
      Location:431 → 614
      GuKc; Guanylate kinase homologues
      cd00992
      Location:146 → 227
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cl17036
      Location:241 → 300
      SH3; Src Homology 3 domain superfamily

    RNA

    1. XR_006377121.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases