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    LOC122436475 zinc finger Y-chromosomal protein [ Cervus canadensis ]

    Gene ID: 122436475, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC122436475
    Gene description
    zinc finger Y-chromosomal protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cervus canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
    Also known as
    ZFY
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    Genomic context

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    See LOC122436475 in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current ASM1932006v1 (GCF_019320065.1) Y NC_057420.1 (7401060..7483422, complement)

    Chromosome Y - NC_057420.1Genomic Context describing neighboring genes Neighboring gene testis-specific Y-encoded protein 1-like Neighboring gene testis-specific Y-encoded protein 1-like Neighboring gene eukaryotic translation initiation factor 2 subunit 3, Y-linked-like Neighboring gene eukaryotic translation initiation factor 1A, X-chromosomal-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057420.1 Chromosome Y Reference ASM1932006v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger Y-chromosomal protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cervus canadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1932006v1

    Genomic

    1. NC_057420.1 Reference ASM1932006v1

      Range
      7401060..7483422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043460264.1 → XP_043316199.1  zinc finger Y-chromosomal protein isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:539 → 796
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:486 → 506
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam04704
      Location:71 → 406
      Zfx_Zfy_act; Zfx / Zfy transcription activation region
      cl19880
      Location:373 → 453
      ROS_MUCR; ROS/MUCR transcriptional regulator protein

    2. XM_043460268.1 → XP_043316203.1  zinc finger Y-chromosomal protein isoform X4

      Conserved Domains (2) summary
      COG5048
      Location:492 → 749
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:439 → 459
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_043460266.1 → XP_043316201.1  zinc finger Y-chromosomal protein isoform X2

      Conserved Domains (2) summary
      COG5048
      Location:516 → 773
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:463 → 483
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_043460261.1 → XP_043316196.1  zinc finger Y-chromosomal protein isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:539 → 796
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:486 → 506
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam04704
      Location:71 → 406
      Zfx_Zfy_act; Zfx / Zfy transcription activation region
      cl19880
      Location:373 → 453
      ROS_MUCR; ROS/MUCR transcriptional regulator protein

    5. XM_043460263.1 → XP_043316198.1  zinc finger Y-chromosomal protein isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:539 → 796
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:486 → 506
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam04704
      Location:71 → 406
      Zfx_Zfy_act; Zfx / Zfy transcription activation region
      cl19880
      Location:373 → 453
      ROS_MUCR; ROS/MUCR transcriptional regulator protein

    6. XM_043460262.1 → XP_043316197.1  zinc finger Y-chromosomal protein isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:539 → 796
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:486 → 506
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam04704
      Location:71 → 406
      Zfx_Zfy_act; Zfx / Zfy transcription activation region
      cl19880
      Location:373 → 453
      ROS_MUCR; ROS/MUCR transcriptional regulator protein

    7. XM_043460265.1 → XP_043316200.1  zinc finger Y-chromosomal protein isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:539 → 796
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:486 → 506
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam04704
      Location:71 → 406
      Zfx_Zfy_act; Zfx / Zfy transcription activation region
      cl19880
      Location:373 → 453
      ROS_MUCR; ROS/MUCR transcriptional regulator protein

    8. XM_043460267.1 → XP_043316202.1  zinc finger Y-chromosomal protein isoform X3

      Conserved Domains (2) summary
      COG5048
      Location:513 → 770
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:460 → 480
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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