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    LHX9 LIM homeobox 9 [ Panthera leo (lion) ]

    Gene ID: 122212288, updated on 22-Mar-2024

    Summary

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    Gene symbol
    LHX9
    Gene description
    LIM homeobox 9
    See related
    EnsemblRapid:ENSPLXG00005002439
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Panthera leo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
    Orthologs
    human mouse all
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    Genomic context

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    See LHX9 in Genome Data Viewer
    Location:
    chromosome: F3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current P.leo_Ple1_pat1.1 (GCF_018350215.1) F3 NC_056696.1 (37170265..37186155)

    Chromosome F3 - NC_056696.1Genomic Context describing neighboring genes Neighboring gene DENN domain containing 1B Neighboring gene chromosome F3 C1orf53 homolog Neighboring gene NIMA related kinase 7 Neighboring gene ATPase H+ transporting V1 subunit G3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056696.1 Chromosome F3 Reference P.leo_Ple1_pat1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Panthera leo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.leo_Ple1_pat1.1 Primary Assembly

    Genomic

    1. NC_056696.1 Reference P.leo_Ple1_pat1.1 Primary Assembly

      Range
      37170265..37186155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042926079.1 → XP_042782013.1  LIM/homeobox protein Lhx9 isoform X2

      Related
      ENSPLXP00005003015.1, ENSPLXT00005005042.1
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      smart00389
      Location:267 → 312
      HOX; Homeodomain

    2. XM_042926078.1 → XP_042782012.1  LIM/homeobox protein Lhx9 isoform X1

      UniProtKB/TrEMBL
      A0A8C8XGX6
      Related
      ENSPLXP00005003014.1, ENSPLXT00005005040.1
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:271 → 324
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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