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    PDGFRB platelet derived growth factor receptor beta [ Lagopus leucura (white-tailed ptarmigan) ]

    Gene ID: 122185562, updated on 11-Apr-2024

    Summary

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    Gene symbol
    PDGFRB
    Gene description
    platelet derived growth factor receptor beta
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagopus leucura
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
    Orthologs
    human mouse all
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    Genomic context

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    See PDGFRB in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current USGS_WTPT01 (GCF_019238085.1) Unplaced Scaffold NW_024962281.1 (4940139..4965568, complement)

    NW_024962281.1Genomic Context describing neighboring genes Neighboring gene HMG-box containing 3 Neighboring gene colony stimulating factor 1 receptor Neighboring gene caudal type homeobox 1 Neighboring gene solute carrier family 6 member 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024962281 Unplaced Scaffold Reference USGS_WTPT01

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables platelet-derived growth factor beta-receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables platelet-derived growth factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of smooth muscle cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    platelet-derived growth factor receptor beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagopus leucura Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USGS_WTPT01

    Genomic

    1. NW_024962281.1 Reference USGS_WTPT01

      Range
      4940139..4965568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042881471.1 → XP_042737405.1  platelet-derived growth factor receptor beta

      Conserved Domains (4) summary
      cd05107
      Location:558 → 959
      PTKc_PDGFR_beta; Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta
      smart00409
      Location:217 → 305
      IG; Immunoglobulin
      cd00096
      Location:342 → 346
      Ig; Ig strand C [structural motif]
      cl11960
      Location:334 → 406
      Ig; Immunoglobulin domain

    2. XM_042881472.1 → XP_042737406.1  platelet-derived growth factor receptor beta

      Conserved Domains (4) summary
      cd05107
      Location:558 → 959
      PTKc_PDGFR_beta; Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta
      smart00409
      Location:217 → 305
      IG; Immunoglobulin
      cd00096
      Location:342 → 346
      Ig; Ig strand C [structural motif]
      cl11960
      Location:334 → 406
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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