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    LOC122008387 syntaxin-52-like [ Zingiber officinale ]

    Gene ID: 122008387, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC122008387
    Gene description
    syntaxin-52-like
    Locus tag
    ZIOFF_054508
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zingiber officinale
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
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    Genomic context

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    See LOC122008387 in Genome Data Viewer
    Location:
    chromosome: 8A
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Zo_v1.1 (GCF_018446385.1) 8A NC_056000.1 (33855735..33859784)

    Chromosome 8A - NC_056000.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L36-2-like Neighboring gene heat shock cognate 70 kDa protein-like Neighboring gene protein ALP1-like Neighboring gene ankyrin repeat-containing protein ITN1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056000.1 Chromosome 8A Reference Zo_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-52-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zo_v1.1 Primary Assembly

    Genomic

    1. NC_056000.1 Reference Zo_v1.1 Primary Assembly

      Range
      33855735..33859784
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042564101.1 → XP_042420035.1  syntaxin-52-like

      UniProtKB/TrEMBL
      A0A8J5FA23
      Conserved Domains (2) summary
      TIGR02168
      Location:38 → 202
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd15841
      Location:140 → 197
      SNARE_Qc; SNARE motif, subgroup Qc
    Nucleotide Protein
    Heading Accession and Version

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