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    LOC121868479 helix-loop-helix protein lin-22-like [ Homarus americanus (American lobster) ]

    Gene ID: 121868479, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121868479
    Gene description
    helix-loop-helix protein lin-22-like
    Locus tag
    Hamer_G023231
    See related
    EnsemblRapid:LOC121868479
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Homarus americanus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
    Also known as
    dpn-L7
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    Genomic context

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    See LOC121868479 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024732384.1 (26486..28319, complement)

    NW_024732384.1Genomic Context describing neighboring genes Neighboring gene bestrophin-2-like Neighboring gene protein scarlet-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024732384 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of neurogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    helix-loop-helix protein lin-22-like
    Names
    deadpan-like 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GMGI_Hamer_2.0 Primary Assembly

    Genomic

    1. NW_024732384.1 Reference GMGI_Hamer_2.0 Primary Assembly

      Range
      26486..28319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042369145.1 → XP_042225079.1  helix-loop-helix protein lin-22-like

      Related
      XP_042225079.1, XM_042369145.1
      Conserved Domains (1) summary
      cl00081
      Location:18 → 87
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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