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    klf4 Kruppel-like factor 4 [ Alosa sapidissima (American shad) ]

    Gene ID: 121680650, updated on 22-Mar-2024

    Summary

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    Gene symbol
    klf4
    Gene description
    Kruppel-like factor 4
    See related
    EnsemblRapid:ENSASDG00000030139
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alosa sapidissima
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
    Orthologs
    human zebrafish all
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    Genomic context

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    See klf4 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current fAloSap1.pri (GCF_018492685.1) 13 NC_055969.1 (3222153..3226119, complement)

    Chromosome 13 - NC_055969.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 462 Neighboring gene RAD23 homolog B, nucleotide excision repair protein Neighboring gene alpha-synuclein-like Neighboring gene vimentin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_055969.1 Chromosome 13 Reference fAloSap1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Krueppel-like factor 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alosa sapidissima Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAloSap1.pri Primary Assembly

    Genomic

    1. NC_055969.1 Reference fAloSap1.pri Primary Assembly

      Range
      3222153..3226119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042060119.1 → XP_041916053.1  Krueppel-like factor 4

      Related
      ENSASDP00000051307.1, ENSASDT00000042420.1
      Conserved Domains (2) summary
      COG5048
      Location:325 → 408
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:332 → 354
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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