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    MGRN1 mahogunin ring finger 1 [ Corvus kubaryi (Mariana crow) ]

    Gene ID: 121668859, updated on 3-Aug-2024

    Summary

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    Gene symbol
    MGRN1
    Gene description
    mahogunin ring finger 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corvus kubaryi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
    Orthologs
    human mouse all
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    Genomic context

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    See MGRN1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current C.kubaryi_AGA036_p1.0 (GCF_017639235.1) Unplaced Scaffold NW_024581129.1 (13247139..13297249, complement)

    NW_024581129.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 60, NatF catalytic subunit Neighboring gene nudix hydrolase 16 like 1 Neighboring gene UBA like domain containing 1 Neighboring gene cell death inducing p53 target 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024581129 Unplaced Scaffold Reference C.kubaryi_AGA036_p1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosome to lysosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cAMP-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase MGRN1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corvus kubaryi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.kubaryi_AGA036_p1.0

    Genomic

    1. NW_024581129.1 Reference C.kubaryi_AGA036_p1.0

      Range
      13247139..13297249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042037087.1 → XP_041893021.1  E3 ubiquitin-protein ligase MGRN1 isoform X1

      Conserved Domains (3) summary
      PHA03307
      Location:335 → 567
      PHA03307; transcriptional regulator ICP4; Provisional
      cd16789
      Location:278 → 318
      mRING-HC-C3HC5_MGRN1_like---blasttree; Modified RING finger, HC subclass (C3HC5-type), found in mahogunin RING finger protein 1 (MGRN1), RING finger protein 157 (RNF157) and similar proteins
      cl29320
      Location:233 → 332
      KilA-N; KilA-N domain

    2. XM_042037088.1 → XP_041893022.1  E3 ubiquitin-protein ligase MGRN1 isoform X2

      Conserved Domains (2) summary
      cd16789
      Location:278 → 318
      mRING-HC-C3HC5_MGRN1_like---blasttree; Modified RING finger, HC subclass (C3HC5-type), found in mahogunin RING finger protein 1 (MGRN1), RING finger protein 157 (RNF157) and similar proteins
      cl29320
      Location:233 → 332
      KilA-N; KilA-N domain

    3. XM_042037091.1 → XP_041893025.1  E3 ubiquitin-protein ligase MGRN1 isoform X5

      Conserved Domains (2) summary
      cd16789
      Location:278 → 318
      mRING-HC-C3HC5_MGRN1_like---blasttree; Modified RING finger, HC subclass (C3HC5-type), found in mahogunin RING finger protein 1 (MGRN1), RING finger protein 157 (RNF157) and similar proteins
      cl29320
      Location:233 → 332
      KilA-N; KilA-N domain

    4. XM_042037089.1 → XP_041893023.1  E3 ubiquitin-protein ligase MGRN1 isoform X3

      Conserved Domains (2) summary
      cd16789
      Location:278 → 318
      mRING-HC-C3HC5_MGRN1_like---blasttree; Modified RING finger, HC subclass (C3HC5-type), found in mahogunin RING finger protein 1 (MGRN1), RING finger protein 157 (RNF157) and similar proteins
      cl29320
      Location:233 → 332
      KilA-N; KilA-N domain

    5. XM_042037093.1 → XP_041893027.1  E3 ubiquitin-protein ligase MGRN1 isoform X6

      Conserved Domains (2) summary
      cd16789
      Location:278 → 318
      mRING-HC-C3HC5_MGRN1_like---blasttree; Modified RING finger, HC subclass (C3HC5-type), found in mahogunin RING finger protein 1 (MGRN1), RING finger protein 157 (RNF157) and similar proteins
      cl29320
      Location:233 → 332
      KilA-N; KilA-N domain

    6. XM_042037090.1 → XP_041893024.1  E3 ubiquitin-protein ligase MGRN1 isoform X4

      Conserved Domains (2) summary
      cd16789
      Location:278 → 318
      mRING-HC-C3HC5_MGRN1_like---blasttree; Modified RING finger, HC subclass (C3HC5-type), found in mahogunin RING finger protein 1 (MGRN1), RING finger protein 157 (RNF157) and similar proteins
      cl29320
      Location:233 → 332
      KilA-N; KilA-N domain
    Nucleotide Protein
    Heading Accession and Version

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