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    RIGI RNA sensor RIG-I [ Corvus kubaryi (Mariana crow) ]

    Gene ID: 121662427, updated on 3-Aug-2024

    Summary

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    Gene symbol
    RIGI
    Gene description
    RNA sensor RIG-I
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corvus kubaryi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
    Also known as
    DDX58
    Orthologs
    human mouse all
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    Genomic context

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    See RIGI in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current C.kubaryi_AGA036_p1.0 (GCF_017639235.1) Unplaced Scaffold NW_024581072.1 (5532372..5556158)

    NW_024581072.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 4 inhibitor B-like Neighboring gene uncharacterized LOC121662426 Neighboring gene cyclin-dependent kinase 4 inhibitor B-like Neighboring gene uncharacterized LOC121662429 Neighboring gene aconitase 1 Neighboring gene diacylglycerol kinase theta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024581072 Unplaced Scaffold Reference C.kubaryi_AGA036_p1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    antiviral innate immune response receptor RIG-I
    Names
    DExD/H-box helicase 58

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corvus kubaryi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.kubaryi_AGA036_p1.0

    Genomic

    1. NW_024581072.1 Reference C.kubaryi_AGA036_p1.0

      Range
      5532372..5556158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042023563.1 → XP_041879497.1  antiviral innate immune response receptor RIG-I isoform X3

      Conserved Domains (4) summary
      COG1111
      Location:245 → 772
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08816
      Location:2 → 91
      CARD_RIG-I_r1; Caspase activation and recruitment domain found in RIG-I, first repeat
      cd08817
      Location:99 → 188
      CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
      cd18073
      Location:243 → 444
      DEXHc_RIG-I_DDX58; DEXH-box helicase domain of RIG-I

    2. XM_042023562.1 → XP_041879496.1  antiviral innate immune response receptor RIG-I isoform X2

      Conserved Domains (4) summary
      COG1111
      Location:245 → 772
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08816
      Location:2 → 91
      CARD_RIG-I_r1; Caspase activation and recruitment domain found in RIG-I, first repeat
      cd08817
      Location:99 → 188
      CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
      cd18073
      Location:243 → 444
      DEXHc_RIG-I_DDX58; DEXH-box helicase domain of RIG-I

    3. XM_042023561.1 → XP_041879495.1  antiviral innate immune response receptor RIG-I isoform X1

      Conserved Domains (5) summary
      COG1111
      Location:245 → 782
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08816
      Location:2 → 91
      CARD_RIG-I_r1; Caspase activation and recruitment domain found in RIG-I, first repeat
      cd08817
      Location:99 → 188
      CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
      cd15805
      Location:809 → 921
      RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
      cd18073
      Location:243 → 444
      DEXHc_RIG-I_DDX58; DEXH-box helicase domain of RIG-I
    Nucleotide Protein
    Heading Accession and Version

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