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    AP2B1 adaptor related protein complex 2 subunit beta 1 [ Cygnus olor (mute swan) ]

    Gene ID: 121058099, updated on 22-Mar-2024

    Summary

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    Gene symbol
    AP2B1
    Gene description
    adaptor related protein complex 2 subunit beta 1
    See related
    EnsemblRapid:ENSCOLG00015007945
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus olor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
    Orthologs
    human mouse all
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    Genomic context

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    See AP2B1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    100 current bCygOlo1.pri.v2 (GCF_009769625.2) 20 NC_049188.1 (5254184..5337033, complement)

    Chromosome 20 - NC_049188.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 28 Neighboring gene growth arrest specific 2 like 2 Neighboring gene RAS like family 10 member B Neighboring gene Z30 small nucleolar RNA Neighboring gene schlafen family member 13-like Neighboring gene peroxisomal biogenesis factor 12 Neighboring gene unc-45 myosin chaperone B Neighboring gene RAD51 paralog D

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049188.1 Chromosome 20 Reference bCygOlo1.pri.v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-2 complex subunit beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cygnus olor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCygOlo1.pri.v2 Primary Assembly

    Genomic

    1. NC_049188.1 Reference bCygOlo1.pri.v2 Primary Assembly

      Range
      5254184..5337033 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040533181.1 → XP_040389115.1  AP-2 complex subunit beta isoform X2

      Conserved Domains (4) summary
      smart00809
      Location:717 → 817
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:826 → 936
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    2. XM_040533178.1 → XP_040389112.1  AP-2 complex subunit beta isoform X1

      Conserved Domains (4) summary
      smart00809
      Location:731 → 831
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:840 → 950
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    3. XM_040533180.1 → XP_040389114.1  AP-2 complex subunit beta isoform X2

      Related
      ENSCOLP00015013356.1, ENSCOLT00015014373.1
      Conserved Domains (4) summary
      smart00809
      Location:717 → 817
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:826 → 936
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    4. XM_040533182.1 → XP_040389116.1  AP-2 complex subunit beta isoform X2

      Related
      ENSCOLP00015013388.1, ENSCOLT00015014418.1
      Conserved Domains (4) summary
      smart00809
      Location:717 → 817
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:826 → 936
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    5. XM_040533177.1 → XP_040389111.1  AP-2 complex subunit beta isoform X1

      Conserved Domains (4) summary
      smart00809
      Location:731 → 831
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:840 → 950
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    6. XM_040533179.1 → XP_040389113.1  AP-2 complex subunit beta isoform X1

      Related
      ENSCOLP00015013379.1, ENSCOLT00015014407.1
      Conserved Domains (4) summary
      smart00809
      Location:731 → 831
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:840 → 950
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region
    Nucleotide Protein
    Heading Accession and Version

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