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    PHF2 PHD finger protein 2 [ Bufo bufo (common toad) ]

    Gene ID: 120979875, updated on 21-Mar-2024

    Summary

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    Gene symbol
    PHF2
    Gene description
    PHD finger protein 2
    See related
    EnsemblRapid:ENSBBFG00005022220
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bufo bufo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
    Orthologs
    human mouse all
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    Genomic context

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    See PHF2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current aBufBuf1.1 (GCF_905171765.1) 9 NC_053397.1 (182151587..182396707, complement)

    Chromosome 9 - NC_053397.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120978658 Neighboring gene uncharacterized LOC120978659 Neighboring gene uncharacterized LOC120978931 Neighboring gene family with sequence similarity 120 member A Neighboring gene WNK lysine deficient protein kinase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053397.1 Chromosome 9 Reference aBufBuf1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase PHF2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bufo bufo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aBufBuf1.1

    Genomic

    1. NC_053397.1 Reference aBufBuf1.1

      Range
      182151587..182396707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040408835.1 → XP_040264769.1  lysine-specific demethylase PHF2 isoform X2

      Conserved Domains (2) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

    2. XM_040408833.1 → XP_040264767.1  lysine-specific demethylase PHF2 isoform X1

      Related
      ENSBBFP00005030100.1, ENSBBFT00005033823.1
      Conserved Domains (2) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

    3. XM_040408836.1 → XP_040264770.1  lysine-specific demethylase PHF2 isoform X3

      Conserved Domains (2) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7
    Nucleotide Protein
    Heading Accession and Version

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