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    HOOK3 hook microtubule tethering protein 3 [ Hirundo rustica (Barn swallow) ]

    Gene ID: 120765422, updated on 3-Aug-2024

    Summary

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    Gene symbol
    HOOK3
    Gene description
    hook microtubule tethering protein 3
    See related
    EnsemblRapid:ENSHRRG00010012111
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hirundo rustica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
    Orthologs
    human mouse all
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    Genomic context

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    See HOOK3 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) Z NC_053488.1 (73376608..73462760)

    Chromosome Z - NC_053488.1Genomic Context describing neighboring genes Neighboring gene transcription factor JunD-like Neighboring gene THAP domain containing 1 Neighboring gene ring finger protein 170 Neighboring gene E3 ubiquitin-protein ligase KCMF1-like Neighboring gene farnesyltransferase, CAAX box, subunit alpha

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053488.1 Chromosome Z Reference bHirRus1.pri.v3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dynein light intermediate chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton-dependent intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Hook homolog 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bHirRus1.pri.v3

    Genomic

    1. NC_053488.1 Reference bHirRus1.pri.v3

      Range
      73376608..73462760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040090267.2 → XP_039946201.1  protein Hook homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0A7L4F555
      Conserved Domains (2) summary
      pfam05622
      Location:184 → 735
      HOOK; HOOK protein
      cl41774
      Location:8 → 160
      HkD_SF; Hook domain-containing proteins superfamily

    2. XM_040090270.2 → XP_039946204.1  protein Hook homolog 3 isoform X3

      UniProtKB/TrEMBL
      A0A7L4F555
      Related
      ENSHRRP00010016401.1, ENSHRRT00010017391.2
      Conserved Domains (2) summary
      pfam05622
      Location:184 → 709
      HOOK; HOOK protein
      cl41774
      Location:8 → 160
      HkD_SF; Hook domain-containing proteins superfamily

    3. XM_040090268.1 → XP_039946202.1  protein Hook homolog 3 isoform X2

      UniProtKB/TrEMBL
      A0A7L4F555
      Conserved Domains (2) summary
      COG0419
      Location:259 → 690
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR02169
      Location:139 → 373
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    4. XM_040090271.1 → XP_039946205.1  protein Hook homolog 3 isoform X4

      UniProtKB/TrEMBL
      A0A7L4F555
      Conserved Domains (2) summary
      pfam05622
      Location:184 → 709
      HOOK; HOOK protein
      cl41774
      Location:8 → 160
      HkD_SF; Hook domain-containing proteins superfamily
    Nucleotide Protein
    Heading Accession and Version

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