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    LOC120672862 probable potassium transporter 2 [ Panicum virgatum (switchgrass) ]

    Gene ID: 120672862, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120672862
    Gene description
    probable potassium transporter 2
    Locus tag
    PVAP13_5NG619900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Panicum virgatum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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    Genomic context

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    See LOC120672862 in Genome Data Viewer
    Location:
    chromosome: 5N
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current P.virgatum_v5 (GCF_016808335.1) 5N NC_053149.1 (69928673..69933689)

    Chromosome 5N - NC_053149.1Genomic Context describing neighboring genes Neighboring gene cullin-1-like Neighboring gene protein SRG1-like Neighboring gene spermatogenesis-associated protein 20-like Neighboring gene cytochrome c1-2, heme protein, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053149.1 Chromosome 5N Reference P.virgatum_v5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable potassium transporter 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.virgatum_v5 Primary Assembly

    Genomic

    1. NC_053149.1 Reference P.virgatum_v5 Primary Assembly

      Range
      69928673..69933689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039953465.1 → XP_039809399.1  probable potassium transporter 2

      UniProtKB/TrEMBL
      A0A8T0S686, A0A8T0S7C3
      Conserved Domains (1) summary
      PLN00148
      Location:1 → 783
      PLN00148; potassium transporter; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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