U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC120642493 mRNA cap guanine-N7 methyltransferase 2 [ Panicum virgatum (switchgrass) ]

    Gene ID: 120642493, updated on 25-Jan-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC120642493
    Gene description
    mRNA cap guanine-N7 methyltransferase 2
    Locus tag
    PVAP13_7KG255900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Panicum virgatum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC120642493 in Genome Data Viewer
    Location:
    chromosome: 7K
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current P.virgatum_v5 (GCF_016808335.1) 7K NC_053142.1 (40183450..40186779)

    Chromosome 7K - NC_053142.1Genomic Context describing neighboring genes Neighboring gene transcription factor TCP7-like Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene cytosolic sulfotransferase 15-like Neighboring gene GEM-like protein 7

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_053142.1 Chromosome 7K Reference P.virgatum_v5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 5'-cap (guanine-N7-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 7-methylguanosine mRNA capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    mRNA cap guanine-N7 methyltransferase 2
    Names
    S-adenosyl-L-methionine-dependent methyltransferase superfamily protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.virgatum_v5 Primary Assembly

    Genomic

    1. NC_053142.1 Reference P.virgatum_v5 Primary Assembly

      Range
      40183450..40186779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039919050.1 → XP_039774984.1  mRNA cap guanine-N7 methyltransferase 2

      UniProtKB/TrEMBL
      A0A8T0QEX1
      Conserved Domains (1) summary
      cl17173
      Location:20 → 282
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. XM_039919049.1 → XP_039774983.1  mRNA cap guanine-N7 methyltransferase 2

      UniProtKB/TrEMBL
      A0A8T0QEX1
      Conserved Domains (1) summary
      cl17173
      Location:20 → 282
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases