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    NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 [ Mauremys reevesii (Reeves's turtle) ]

    Gene ID: 120399610, updated on 21-Mar-2024

    Summary

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    Gene symbol
    NHLRC1
    Gene description
    NHL repeat containing E3 ubiquitin protein ligase 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys reevesii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
    Orthologs
    human mouse all
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    Genomic context

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    See NHLRC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly LG Location
    100 current ASM1616193v1 (GCF_016161935.1) 2 NC_052624.1 (179970778..179972061, complement)

    Linkage Group 2 - NC_052624.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 13A Neighboring gene uncharacterized LOC120399614 Neighboring gene thiopurine S-methyltransferase Neighboring gene lysine demethylase 1B Neighboring gene DEK proto-oncogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052624.1 Chromosome 2 Reference ASM1616193v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase NHLRC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1616193v1 Primary Assembly

    Genomic

    1. NC_052624.1 Reference ASM1616193v1 Primary Assembly

      Range
      179970778..179972061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039528044.1 → XP_039383978.1  E3 ubiquitin-protein ligase NHLRC1

      Conserved Domains (2) summary
      cd14961
      Location:125 → 398
      NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
      cd16516
      Location:25 → 72
      RING-HC_malin; RING finger, HC subclass, found in malin and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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