U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC120063400 F-box only protein 21-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120063400, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC120063400
    Gene description
    F-box only protein 21-like
    See related
    EnsemblRapid:ENSSNMG00000013093
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC120063400 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 18 NC_052324.1 (36495368..36510874)

    Chromosome 18 - NC_052324.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 17A Neighboring gene calcium-binding protein 7-like Neighboring gene calcineurin B homologous protein 3-like Neighboring gene F-box/WD repeat-containing protein 8-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_052324.1 Chromosome 18 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    F-box only protein 21-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052324.1 Reference SaNama_1.0 Primary Assembly

      Range
      36495368..36510874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039013764.1 → XP_038869692.1  F-box only protein 21-like isoform X1

      UniProtKB/TrEMBL
      A0A8U1F4Q3
      Conserved Domains (4) summary
      COG2912
      Location:178 → 442
      SirB1; Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms]
      pfam08755
      Location:501 → 587
      YccV-like; Hemimethylated DNA-binding protein YccV like
      pfam12937
      Location:25 → 62
      F-box-like
      pfam13369
      Location:258 → 387
      Transglut_core2; Transglutaminase-like superfamily

    2. XM_039013765.1 → XP_038869693.1  F-box only protein 21-like isoform X2

      UniProtKB/TrEMBL
      A0A8U1F4J4
      Related
      ENSSNMP00000016625.1, ENSSNMT00000019541.1
      Conserved Domains (3) summary
      pfam08755
      Location:496 → 582
      YccV-like; Hemimethylated DNA-binding protein YccV like
      pfam12937
      Location:25 → 62
      F-box-like
      pfam13369
      Location:258 → 387
      Transglut_core2; Transglutaminase-like superfamily

    3. XM_039013766.1 → XP_038869694.1  F-box only protein 21-like isoform X3

      UniProtKB/TrEMBL
      A0A8U1F5D1
      Conserved Domains (4) summary
      COG2912
      Location:173 → 437
      SirB1; Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms]
      pfam08755
      Location:496 → 582
      YccV-like; Hemimethylated DNA-binding protein YccV like
      pfam12937
      Location:25 → 62
      F-box-like
      pfam13369
      Location:253 → 382
      Transglut_core2; Transglutaminase-like superfamily

    4. XM_039013767.1 → XP_038869695.1  F-box only protein 21-like isoform X4

      UniProtKB/TrEMBL
      A0A8U1F533
      Conserved Domains (3) summary
      COG2912
      Location:142 → 406
      SirB1; Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms]
      pfam08755
      Location:465 → 551
      YccV-like; Hemimethylated DNA-binding protein YccV like
      pfam13369
      Location:222 → 351
      Transglut_core2; Transglutaminase-like superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases