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    LOC120054210 pleckstrin homology domain-containing family A member 5-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120054210, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120054210
    Gene description
    pleckstrin homology domain-containing family A member 5-like
    See related
    EnsemblRapid:ENSSNMG00000031035
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120054210 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 9 NC_052315.1 (55556322..55659161)

    Chromosome 9 - NC_052315.1Genomic Context describing neighboring genes Neighboring gene reelin-like Neighboring gene reelin-like Neighboring gene zinc finger protein aebp2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052315.1 Chromosome 9 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,5-bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-5-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pleckstrin homology domain-containing family A member 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052315.1 Reference SaNama_1.0 Primary Assembly

      Range
      55556322..55659161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039001670.1 → XP_038857598.1  pleckstrin homology domain-containing family A member 5-like isoform X1

      UniProtKB/TrEMBL
      A0A8U1BLW0
      Conserved Domains (1) summary
      cd13248
      Location:47 → 150
      PH_PEPP1_2_3; Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

    2. XM_039001671.1 → XP_038857599.1  pleckstrin homology domain-containing family A member 5-like isoform X2

      UniProtKB/TrEMBL
      A0A8U1BYJ8
      Related
      ENSSNMP00000044102.1, ENSSNMT00000048844.1
      Conserved Domains (1) summary
      cl17171
      Location:1 → 25
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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