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    LOC120054204 tyrosine-protein kinase CSK-like [ Salvelinus namaycush (lake trout) ]

    Gene ID: 120054204, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120054204
    Gene description
    tyrosine-protein kinase CSK-like
    See related
    EnsemblRapid:ENSSNMG00000032756
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus namaycush
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
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    Genomic context

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    See LOC120054204 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current SaNama_1.0 (GCF_016432855.1) 9 NC_052315.1 (54370189..54391480)

    Chromosome 9 - NC_052315.1Genomic Context describing neighboring genes Neighboring gene activating molecule in BECN1-regulated autophagy protein 1-like Neighboring gene protein fem-1 homolog B-like Neighboring gene N6-Methyl-AMP deaminase Neighboring gene N-acetyltransferase 10 Neighboring gene cell cycle associated protein 1b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052315.1 Chromosome 9 Reference SaNama_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adherens junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of Fc receptor mediated stimulatory signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein kinase CSK-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus namaycush Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SaNama_1.0 Primary Assembly

    Genomic

    1. NC_052315.1 Reference SaNama_1.0 Primary Assembly

      Range
      54370189..54391480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039001663.1 → XP_038857591.1  tyrosine-protein kinase CSK-like

      UniProtKB/TrEMBL
      A0A8U1BNN1
      Related
      ENSSNMP00000046754.1, ENSSNMT00000051584.1
      Conserved Domains (3) summary
      cd09937
      Location:79 → 176
      SH2_csk_like; Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)
      cd11769
      Location:12 → 68
      SH3_CSK; Src Homology 3 domain of C-terminal Src kinase
      cl21453
      Location:189 → 444
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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