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    LOC119964245 roquin-1-like [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119964245, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC119964245
    Gene description
    roquin-1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
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    Genomic context

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    See LOC119964245 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 4 NC_052149.1 (128359816..128575774, complement)

    Chromosome 4 - NC_052149.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 37 Neighboring gene serpin peptidase inhibitor, clade C (antithrombin), member 1 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC119964155

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052149.1 Chromosome 4 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    roquin-1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052149.1 Reference sScyCan1.1 Primary Assembly

      Range
      128359816..128575774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038793525.1 → XP_038649453.1  roquin-1-like

      Conserved Domains (4) summary
      PHA03247
      Location:533 → 805
      PHA03247; large tegument protein UL36; Provisional
      cd16638
      Location:11 → 54
      mRING-HC-C3HC3D_Roquin; Modified RING finger, HC subclass (C3HC3D-type), found in Roquin-1, Roquin-2, and similar proteins
      pfam00642
      Location:414 → 440
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam18386
      Location:271 → 326
      ROQ_II; Roquin II domain
    Nucleotide Protein
    Heading Accession and Version

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