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    LOC119963948 lipoxygenase homology domain-containing protein 1-like [ Scyliorhinus canicula (smaller spotted catshark) ]

    Gene ID: 119963948, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC119963948
    Gene description
    lipoxygenase homology domain-containing protein 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scyliorhinus canicula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
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    Genomic context

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    See LOC119963948 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    47
    Annotation release Status Assembly Chr Location
    100 current sScyCan1.1 (GCF_902713615.1) 3 NC_052148.1 (43784749..44067228, complement)

    Chromosome 3 - NC_052148.1Genomic Context describing neighboring genes Neighboring gene arkadia (rnf111) N-terminal like PKA signaling regulator 2n Neighboring gene arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2Ca Neighboring gene uncharacterized LOC119963949 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 Neighboring gene uncharacterized LOC119962622 Neighboring gene small nucleolar RNA SNORA5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052148.1 Chromosome 3 Reference sScyCan1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: lipoxygenase homology domain-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sScyCan1.1 Primary Assembly

    Genomic

    1. NC_052148.1 Reference sScyCan1.1 Primary Assembly

      Range
      43784749..44067228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038793391.1 → XP_038649319.1  LOW QUALITY PROTEIN: lipoxygenase homology domain-containing protein 1-like

      Conserved Domains (3) summary
      cd01756
      Location:1394 → 1514
      PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
      pfam01477
      Location:2242 → 2347
      PLAT; PLAT/LH2 domain
      cl00011
      Location:1850 → 1967
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    Nucleotide Protein
    Heading Accession and Version

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