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    PPARGC1A PPARG coactivator 1 alpha [ Motacilla alba alba ]

    Gene ID: 119700248, updated on 3-Aug-2024

    Summary

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    Gene symbol
    PPARGC1A
    Gene description
    PPARG coactivator 1 alpha
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Motacilla alba alba (sub-species: alba)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Motacillidae; Motacilla
    Orthologs
    human mouse all
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    Genomic context

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    See PPARGC1A in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current Motacilla_alba_V1.0_pri (GCF_015832195.1) 4 NC_052019.1 (17522995..17889788, complement)

    Chromosome 4 - NC_052019.1Genomic Context describing neighboring genes Neighboring gene cytosolic beta-glucosidase-like Neighboring gene uncharacterized LOC119700807 Neighboring gene uncharacterized LOC119700251 Neighboring gene uncharacterized LOC119700250 Neighboring gene DEAH-box helicase 15 Neighboring gene superoxide dismutase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052019.1 Chromosome 4 Reference Motacilla_alba_V1.0_pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisome proliferator-activated receptor gamma coactivator 1-alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Motacilla alba alba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Motacilla_alba_V1.0_pri Primary Assembly

    Genomic

    1. NC_052019.1 Reference Motacilla_alba_V1.0_pri Primary Assembly

      Range
      17522995..17889788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038135009.1 → XP_037990937.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X3

      Conserved Domains (3) summary
      PTZ00449
      Location:238 → 401
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:682 → 716
      Synaphin; Synaphin protein
      cd12623
      Location:720 → 810
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    2. XM_038135013.1 → XP_037990941.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X7

      Conserved Domains (3) summary
      PTZ00449
      Location:203 → 366
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:647 → 681
      Synaphin; Synaphin protein
      cd12623
      Location:685 → 775
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    3. XM_038135011.1 → XP_037990939.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X5

      Conserved Domains (3) summary
      PTZ00449
      Location:216 → 379
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:660 → 694
      Synaphin; Synaphin protein
      cd12623
      Location:698 → 788
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    4. XM_038135008.1 → XP_037990936.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X2

      Conserved Domains (3) summary
      PTZ00449
      Location:266 → 429
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:710 → 744
      Synaphin; Synaphin protein
      cd12623
      Location:748 → 838
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    5. XM_038135007.1 → XP_037990935.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X1

      Conserved Domains (3) summary
      PTZ00449
      Location:301 → 464
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:745 → 779
      Synaphin; Synaphin protein
      cd12623
      Location:783 → 873
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    6. XM_038135015.1 → XP_037990943.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X9

      Conserved Domains (3) summary
      PTZ00449
      Location:140 → 303
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:584 → 618
      Synaphin; Synaphin protein
      cd12623
      Location:622 → 712
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    7. XM_038135017.1 → XP_037990945.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X9

      Conserved Domains (3) summary
      PTZ00449
      Location:140 → 303
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:584 → 618
      Synaphin; Synaphin protein
      cd12623
      Location:622 → 712
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    8. XM_038135010.1 → XP_037990938.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X4

      Conserved Domains (3) summary
      PTZ00449
      Location:225 → 388
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:669 → 703
      Synaphin; Synaphin protein
      cd12623
      Location:707 → 797
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    9. XM_038135014.1 → XP_037990942.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X8

      Conserved Domains (3) summary
      PTZ00449
      Location:190 → 353
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:634 → 668
      Synaphin; Synaphin protein
      cd12623
      Location:672 → 762
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins

    10. XM_038135012.1 → XP_037990940.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X6

      Conserved Domains (3) summary
      PTZ00449
      Location:209 → 372
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      pfam05835
      Location:653 → 687
      Synaphin; Synaphin protein
      cd12623
      Location:691 → 781
      RRM_PPARGC1A; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1alpha, or PPARGC-1-alpha) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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