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    eIF2D eukaryotic translation initiation factor 2D [ Penaeus monodon (black tiger shrimp) ]

    Gene ID: 119585610, updated on 3-Jul-2024

    Summary

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    Gene symbol
    eIF2D
    Gene description
    eukaryotic translation initiation factor 2D
    See related
    EnsemblRapid:LOC119585610
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Penaeus monodon
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
    Orthologs
    fruit fly all
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    Genomic context

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    See eIF2D in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current NSTDA_Pmon_1 (GCF_015228065.1) 20 NC_051405.1 (7556447..7574562, complement)

    Chromosome 20 - NC_051405.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119585609 Neighboring gene trafficking protein particle complex subunit 8 homolog l(3)76BDm Neighboring gene homeobox protein prospero Neighboring gene uncharacterized LOC119585612

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051405.1 Chromosome 20 Reference NSTDA_Pmon_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formation of translation preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 2D-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Penaeus monodon Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NSTDA_Pmon_1 Primary Assembly

    Genomic

    1. NC_051405.1 Reference NSTDA_Pmon_1 Primary Assembly

      Range
      7556447..7574562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037934278.1 → XP_037790206.1  eukaryotic translation initiation factor 2D-like isoform X1

      Related
      XP_037790206.1, XM_037934278.1
      Conserved Domains (3) summary
      cd11608
      Location:516 → 600
      eIF2D_C; C-terminal domain of eIF2D and related proteins
      pfam17832
      Location:22 → 112
      Pre-PUA; Pre-PUA-like domain
      cd21156
      Location:114 → 199
      PUA_eIF2d-like; PUA RNA-binding domain of eukaryotic translation initiation factor 2D and similar proteins

    2. XM_037934279.1 → XP_037790207.1  eukaryotic translation initiation factor 2D-like isoform X2

      Related
      XP_037790207.1, XM_037934279.1
      Conserved Domains (3) summary
      cd11608
      Location:496 → 580
      eIF2D_C; C-terminal domain of eIF2D and related proteins
      pfam17832
      Location:2 → 92
      Pre-PUA; Pre-PUA-like domain
      cd21156
      Location:94 → 179
      PUA_eIF2d-like; PUA RNA-binding domain of eukaryotic translation initiation factor 2D and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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