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    Rpb10 DNA-directed RNA polymerases I, II, and III subunit Rpb10 [ Bradysia coprophila ]

    Gene ID: 119078234, updated on 15-May-2024

    Summary

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    Gene symbol
    Rpb10
    Gene description
    DNA-directed RNA polymerases I, II, and III subunit Rpb10
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bradysia coprophila
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Sciaroidea; Sciaridae; Bradysia
    Orthologs
    fruit fly all
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    Genomic context

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    See Rpb10 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current BU_Bcop_v1 (GCF_014529535.1) III NC_050736.1 (3277237..3278104, complement)

    Chromosome III - NC_050736.1Genomic Context describing neighboring genes Neighboring gene DNA primase small subunit Neighboring gene mediator of RNA polymerase II transcription subunit 15 Neighboring gene bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like Neighboring gene hydroxylase/desaturase CTB9-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_050736.1 Chromosome III Reference BU_Bcop_v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of RNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerases I, II, and III subunit RPABC5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bradysia coprophila Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BU_Bcop_v1

    Genomic

    1. NC_050736.1 Reference BU_Bcop_v1

      Range
      3277237..3278104 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037185696.1 → XP_037041591.1  DNA-directed RNA polymerases I, II, and III subunit RPABC5

      Conserved Domains (1) summary
      pfam01194
      Location:1 → 59
      RNA_pol_N; RNA polymerases N / 8 kDa subunit
    Nucleotide Protein Strain
    Heading Accession and Version

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