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    dpf1 double PHD fingers 1 [ Colossoma macropomum (tambaqui) ]

    Gene ID: 118797398, updated on 20-Mar-2024

    Summary

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    Gene symbol
    dpf1
    Gene description
    double PHD fingers 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colossoma macropomum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
    Orthologs
    human zebrafish all
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    Genomic context

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    See dpf1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494786.1 (6634597..6693930, complement)

    NW_023494786.1Genomic Context describing neighboring genes Neighboring gene TRPM8 channel-associated factor homolog Neighboring gene endonuclease domain-containing 1 protein-like Neighboring gene zinc finger FYVE domain-containing protein 1 Neighboring gene NUMB like endocytic adaptor protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023494786 Unplaced Scaffold Reference Colossoma_macropomum

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein neuro-d4
    Names
    D4, zinc and double PHD fingers family 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Colossoma_macropomum

    Genomic

    1. NW_023494786.1 Reference Colossoma_macropomum

      Range
      6634597..6693930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036556744.1 → XP_036412637.1  zinc finger protein neuro-d4

      Conserved Domains (5) summary
      COG5189
      Location:276 → 304
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:282 → 301
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd15530
      Location:395 → 440
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15690
      Location:337 → 394
      PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
      pfam14051
      Location:97 → 163
      Requiem_N; N-terminal domain of DPF2/REQ
    Nucleotide Protein
    Heading Accession and Version

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