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    LOC118386002 interferon-induced helicase C domain-containing protein 1-like [ Oncorhynchus keta (chum salmon) ]

    Gene ID: 118386002, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC118386002
    Gene description
    interferon-induced helicase C domain-containing protein 1-like
    See related
    EnsemblRapid:ENSOKEG00005010588
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus keta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC118386002 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Oket_V2 (GCF_023373465.1) 7 NC_068427.1 (12238485..12267988, complement)

    Chromosome 7 - NC_068427.1Genomic Context describing neighboring genes Neighboring gene sodium-driven chloride bicarbonate exchanger-like Neighboring gene glucagon-1-like Neighboring gene potassium voltage-gated channel subfamily H member 7-like Neighboring gene piggyBac transposable element-derived protein 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_068427.1 Chromosome 7 Reference Oket_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of interferon-beta production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to virus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon-induced helicase C domain-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oket_V2 Primary Assembly

    Genomic

    1. NC_068427.1 Reference Oket_V2 Primary Assembly

      Range
      12238485..12267988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035773331.2 → XP_035629224.1  interferon-induced helicase C domain-containing protein 1-like isoform X1

      Conserved Domains (5) summary
      COG1111
      Location:306 → 854
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08818
      Location:7 → 99
      CARD_MDA5_r1; Caspase activation and recruitment domain found in MDA5, first repeat
      cd08819
      Location:108 → 199
      CARD_MDA5_r2; Caspase activation and recruitment domain found in MDA5, second repeat
      cl13152
      Location:871 → 975
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
      cl28899
      Location:303 → 517
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    2. XM_035773332.2 → XP_035629225.1  interferon-induced helicase C domain-containing protein 1-like isoform X1

      Related
      ENSOKEP00005018027.1, ENSOKET00005020980.1
      Conserved Domains (5) summary
      COG1111
      Location:306 → 854
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08818
      Location:7 → 99
      CARD_MDA5_r1; Caspase activation and recruitment domain found in MDA5, first repeat
      cd08819
      Location:108 → 199
      CARD_MDA5_r2; Caspase activation and recruitment domain found in MDA5, second repeat
      cl13152
      Location:871 → 975
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
      cl28899
      Location:303 → 517
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    3. XM_035773334.2 → XP_035629227.1  interferon-induced helicase C domain-containing protein 1-like isoform X3

      Conserved Domains (5) summary
      COG1111
      Location:306 → 854
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08818
      Location:7 → 99
      CARD_MDA5_r1; Caspase activation and recruitment domain found in MDA5, first repeat
      cd08819
      Location:108 → 199
      CARD_MDA5_r2; Caspase activation and recruitment domain found in MDA5, second repeat
      cl13152
      Location:871 → 979
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
      cl28899
      Location:303 → 517
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    4. XM_035773333.2 → XP_035629226.1  interferon-induced helicase C domain-containing protein 1-like isoform X2

      Related
      ENSOKEP00005017993.1, ENSOKET00005020936.1
      Conserved Domains (5) summary
      COG1111
      Location:306 → 854
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08818
      Location:7 → 99
      CARD_MDA5_r1; Caspase activation and recruitment domain found in MDA5, first repeat
      cd08819
      Location:108 → 199
      CARD_MDA5_r2; Caspase activation and recruitment domain found in MDA5, second repeat
      cl13152
      Location:871 → 985
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
      cl28899
      Location:303 → 517
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    RNA

    1. XR_008139672.1 RNA Sequence

    2. XR_008139671.1 RNA Sequence

    3. XR_004826141.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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