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    LOC118384394 somatotropin-like [ Oncorhynchus keta (chum salmon) ]

    Gene ID: 118384394, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC118384394
    Gene description
    somatotropin-like
    See related
    EnsemblRapid:ENSOKEG00005041289
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus keta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Also known as
    gh
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    Genomic context

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    See LOC118384394 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Oket_V2 (GCF_023373465.1) 5 NC_068425.1 (6708983..6713139)

    Chromosome 5 - NC_068425.1Genomic Context describing neighboring genes Neighboring gene myosin, light chain 4, alkali; atrial, embryonic Neighboring gene sodium channel protein type 4 subunit alpha B Neighboring gene U7 small nuclear RNA Neighboring gene RAD52 motif containing 1 Neighboring gene interferon a3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_068425.1 Chromosome 5 Reference Oket_V2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and expression of cDNA for salmon growth hormone in Escherichia coli. Sekine S, et al. Proc Natl Acad Sci U S A, 1985 Jul. PMID 16593578, Free PMC Article
    2. Isolation and characterization of a novel growth hormone cDNA from chum salmon (Oncorhynchus keta). Sekine S, et al. Biochim Biophys Acta, 1989 Nov 2. PMID 2804077
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables growth hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables growth hormone receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in growth hormone receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of receptor signaling pathway via JAK-STAT IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of tyrosine phosphorylation of STAT protein IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to nutrient levels IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    somatotropin
    Names
    Growth hormone

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oket_V2 Primary Assembly

    Genomic

    1. NC_068425.1 Reference Oket_V2 Primary Assembly

      Range
      6708983..6713139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035770886.2 → XP_035626779.1  somatotropin

      Related
      ENSOKEP00005071170.1, ENSOKET00005085865.1
      Conserved Domains (1) summary
      cd10285
      Location:73 → 253
      somatotropin_like; Somatotropin or growth hormone (GH), placental lactogen, and related pituitary gland hormones
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P07064.1 GenPept UniProtKB/Swiss-Prot:P07064

    Gene LinkOut

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