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    shrprbck1r sharpin and rbck1 related [ Morone saxatilis (striped sea-bass) ]

    Gene ID: 118323894, updated on 20-Mar-2024

    Summary

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    Gene symbol
    shrprbck1r
    Gene description
    sharpin and rbck1 related
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Morone saxatilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
    Orthologs
    zebrafish all
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    Genomic context

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    See shrprbck1r in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023339650.1 (9517346..9528250, complement)

    NW_023339650.1Genomic Context describing neighboring genes Neighboring gene forkhead box H1 Neighboring gene 5-oxoprolinase, ATP-hydrolysing Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene prolactin releasing hormone 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023339650 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein linear polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of LUBAC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ranBP-type and C3HC4-type zinc finger-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NCSU_SB_2.0 Primary Assembly

    Genomic

    1. NW_023339650.1 Reference NCSU_SB_2.0 Primary Assembly

      Range
      9517346..9528250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035655962.1 → XP_035511855.1  ranBP-type and C3HC4-type zinc finger-containing protein 1

      Conserved Domains (6) summary
      smart00547
      Location:397 → 418
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:397 → 416
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      cd16633
      Location:478 → 532
      mRING-HC-C3HC3D_RBR_HOIL1; Modified RING finger, HC subclass (C3HC3D-type), found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      cd01799
      Location:221 → 300
      Ubl_HOIL1; ubiquitin-like (Ubl) domain found in heme-oxidized IRP2 ubiquitin ligase 1 (HOIL-1) and similar proteins
      pfam01485
      Location:634 → 674
      IBR; IBR domain, a half RING-finger domain
      pfam16764
      Location:34 → 152
      Sharpin_PH; Sharpin PH domain
    Nucleotide Protein
    Heading Accession and Version

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